Added files to let people build openjpeg with configure tools ; Added makefiles to let people manually build openjpeg on *nix platforms ; Removed obsolete Makefiles ; Renamed dirent.h to windirent.h ; Made optional the PNG, TIFF, and LCMS support in CMake files ; Added opj_config* files to configure openjpeg before building it (opj_config.h generated by configure, cmake, or manually by the user) ; Renamed this file from ChangeLog to CHANGES ; Renamed License.txt to LICENSE ; Updated README files ; Added INSTALL and LICENSE files ; Added man pages

20 files changed, 2040 insertions, 107 deletions

diff --git a/CMakeLists.txt b/CMakeLists.txt
index ede8b83d..1491d1c3 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,7 +1,4 @@
-# Linux makefile for OpenJPEG
-
-#VER_MAJOR = 1
-#VER_MINOR = 0.0
+# jp3d
 
 # Headers file are located here:
 INCLUDE_DIRECTORIES(
diff --git a/Makefile b/Makefile
deleted file mode 100755
index 1ee93576..00000000
--- a/Makefile
+++ /dev/null
@@ -1,78 +0,0 @@
-# Linux makefile for JP3DVM
-
-VER_MAJOR = 2
-VER_MINOR = 1.3.0
-
-SRCS = ./libjp3dvm/bio.c ./libjp3dvm/cio.c ./libjp3dvm/dwt.c ./libjp3dvm/event.c ./libjp3dvm/jp3d.c ./libjp3dvm/jp3d_lib.c ./libjp3dvm/volume.c ./libjp3dvm/mct.c ./libjp3dvm/mqc.c ./libjp3dvm/openjpeg.c ./libjp3dvm/pi.c ./libjp3dvm/raw.c ./libjp3dvm/t1.c ./libjp3dvm/t1_3d.c ./libjp3dvm/t2.c ./libjp3dvm/tcd.c ./libjp3dvm/tgt.c
-INCLS = ./libjp3dvm/t1_3d.h ./libjp3dvm/bio.h ./libjp3dvm/cio.h ./libjp3dvm/dwt.h ./libjp3dvm/event.h ./libjp3dvm/fix.h ./libjp3dvm/int.h ./libjp3dvm/jp3d.h ./libjp3dvm/jp3d_lib.h ./libjp3dvm/volume.h ./libjp3dvm/mct.h ./libjp3dvm/mqc.h ./libjp3dvm/openjpeg.h ./libjp3dvm/pi.h ./libjp3dvm/raw.h ./libjp3dvm/t1.h  ./libjp3dvm/t2.h ./libjp3dvm/tcd.h ./libjp3dvm/tgt.h ./libjp3dvm/opj_includes.h
-INCLUDE = -Ilibjp3dvm
-
-# General configuration variables:
-CC = gcc
-AR = ar
-
-PREFIX = /usr
-INSTALL_LIBDIR = $(PREFIX)/lib
-INSTALL_INCLUDE = $(PREFIX)/include
-
-# Converts cr/lf to just lf
-DOS2UNIX = dos2unix
-
-COMPILERFLAGS = -Wall -O3 -ffast-math -std=c99 -fPIC
-LIBRARIES = -lstdc++
-
-MODULES = $(SRCS:.c=.o)
-CFLAGS = $(COMPILERFLAGS) $(INCLUDE)
-
-TARGET  = jp3dvm
-STATICLIB = lib$(TARGET).a
-SHAREDLIB = lib$(TARGET)-$(VER_MAJOR).$(VER_MINOR).so
-LIBNAME = lib$(TARGET).so.$(VER_MAJOR)
-
-
-
-default: all
-
-all: Jp3dVM
-
-dist: Jp3dVM
-	install -d dist
-	install -m 644 $(STATICLIB) dist
-	install -m 755 $(SHAREDLIB) dist
-	ln -sf $(SHAREDLIB) dist/$(LIBNAME)
-	install libjp3dvm/openjpeg.h dist
-
-dos2unix:
-	@$(DOS2UNIX) $(SRCS) $(INCLS)
-
-Jp3dVM: $(STATICLIB) $(SHAREDLIB)
-
-.c.o:
-	$(CC) $(CFLAGS) -c $< -o $@
-
-$(STATICLIB): $(MODULES)
-	$(AR) r $@ $(MODULES)
-
-$(SHAREDLIB): $(MODULES)
-	$(CC) -s -shared -Wl,-soname,$(LIBNAME) -o $@ $(MODULES) $(LIBRARIES)
-
-install: Jp3dVM
-	install -d '$(DESTDIR)$(INSTALL_LIBDIR)' '$(DESTDIR)$(INSTALL_INCLUDE)'
-	install -m 644 -o root -g root $(STATICLIB) '$(DESTDIR)$(INSTALL_LIBDIR)'
-	ranlib '$(DESTDIR)$(INSTALL_LIBDIR)/$(STATICLIB)'
-	install -m 755 -o root -g root $(SHAREDLIB) '$(DESTDIR)$(INSTALL_LIBDIR)'
-	ln -sf $(SHAREDLIB) '$(DESTDIR)$(INSTALL_LIBDIR)/$(LIBNAME)'
-	install -m 644 -o root -g root libjp3dvm/openjpeg.h '$(DESTDIR)$(INSTALL_INCLUDE)'
-	-ldconfig
-
-clean:
-	rm -rf core dist/ u2dtmp* $(MODULES) $(STATICLIB) $(SHAREDLIB) $(LIBNAME)
-
-osx:
-	make -f Makefile.osx
-
-osxinstall:
-	make -f Makefile.osx install
-
-osxclean:
-	make -f Makefile.osx clean
diff --git a/Makefile.am b/Makefile.am
new file mode 100644
index 00000000..dc3f81d6
--- /dev/null
+++ b/Makefile.am
@@ -0,0 +1 @@
+SUBDIRS = libjp3dvm codec
diff --git a/Makefile.in b/Makefile.in
new file mode 100644
index 00000000..0800924b
--- /dev/null
+++ b/Makefile.in
@@ -0,0 +1,583 @@
+# Makefile.in generated by automake 1.11.1 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009  Free Software Foundation,
+# Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+VPATH = @srcdir@
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+pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+target_triplet = @target@
+subdir = jp3d
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/opj_config.h
+CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
+SOURCES =
+DIST_SOURCES =
+RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
+	html-recursive info-recursive install-data-recursive \
+	install-dvi-recursive install-exec-recursive \
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+	install-pdf-recursive install-ps-recursive install-recursive \
+	installcheck-recursive installdirs-recursive pdf-recursive \
+	ps-recursive uninstall-recursive
+RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
+  distclean-recursive maintainer-clean-recursive
+AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \
+	$(RECURSIVE_CLEAN_TARGETS:-recursive=) tags TAGS ctags CTAGS \
+	distdir
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+CTAGS = ctags
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+  dir0=`pwd`; \
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+  sed_butlast='s,/*[^/]*$$,,'; \
+  while test -n "$$dir1"; do \
+    first=`echo "$$dir1" | sed -e "$$sed_first"`; \
+    if test "$$first" != "."; then \
+      if test "$$first" = ".."; then \
+        dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
+        dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
+      else \
+        first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
+        if test "$$first2" = "$$first"; then \
+          dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
+        else \
+          dir2="../$$dir2"; \
+        fi; \
+        dir0="$$dir0"/"$$first"; \
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+ACLOCAL = @ACLOCAL@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
+AWK = @AWK@
+BUILD_NR = @BUILD_NR@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CFLAGS = @CFLAGS@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@
+CYGPATH_W = @CYGPATH_W@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DSYMUTIL = @DSYMUTIL@
+DUMPBIN = @DUMPBIN@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+FGREP = @FGREP@
+GREP = @GREP@
+INSTALL = @INSTALL@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+JP3D_BUILD_NR = @JP3D_BUILD_NR@
+JP3D_MAJOR_NR = @JP3D_MAJOR_NR@
+JP3D_MINOR_NR = @JP3D_MINOR_NR@
+LD = @LD@
+LDFLAGS = @LDFLAGS@
+LDLIBS = @LDLIBS@
+LIBOBJS = @LIBOBJS@
+LIBPNG_CONFIG = @LIBPNG_CONFIG@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LIPO = @LIPO@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
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+NMEDIT = @NMEDIT@
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+OTOOL = @OTOOL@
+OTOOL64 = @OTOOL64@
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+PKGCONFIG = @PKGCONFIG@
+RANLIB = @RANLIB@
+SED = @SED@
+SET_MAKE = @SET_MAKE@
+SHELL = @SHELL@
+STRIP = @STRIP@
+VERSION = @VERSION@
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+ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
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+am__leading_dot = @am__leading_dot@
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+build_vendor = @build_vendor@
+builddir = @builddir@
+datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+doxy_dir = @doxy_dir@
+dvidir = @dvidir@
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+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+htmldir = @htmldir@
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+jp3d_dir = @jp3d_dir@
+jpwl_dir = @jpwl_dir@
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+lcms1libs = @lcms1libs@
+lcms2includes = @lcms2includes@
+lcms2libs = @lcms2libs@
+libdir = @libdir@
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+psdir = @psdir@
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+sharedstatedir = @sharedstatedir@
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+target = @target@
+target_alias = @target_alias@
+target_cpu = @target_cpu@
+target_os = @target_os@
+target_vendor = @target_vendor@
+tiffincludes = @tiffincludes@
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+top_srcdir = @top_srcdir@
+with_doxygen = @with_doxygen@
+SUBDIRS = libjp3dvm codec
+all: all-recursive
+
+.SUFFIXES:
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+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
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+	  done | \
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+
+distdir: $(DISTFILES)
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+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+	    fi; \
+	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
+	  else \
+	    test -f "$(distdir)/$$file" \
+	    || cp -p $$d/$$file "$(distdir)/$$file" \
+	    || exit 1; \
+	  fi; \
+	done
+	@list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -d "$(distdir)/$$subdir" \
+	    || $(MKDIR_P) "$(distdir)/$$subdir" \
+	    || exit 1; \
+	  fi; \
+	done
+	@list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    dir1=$$subdir; dir2="$(distdir)/$$subdir"; \
+	    $(am__relativize); \
+	    new_distdir=$$reldir; \
+	    dir1=$$subdir; dir2="$(top_distdir)"; \
+	    $(am__relativize); \
+	    new_top_distdir=$$reldir; \
+	    echo " (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) top_distdir="$$new_top_distdir" distdir="$$new_distdir" \\"; \
+	    echo "     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)"; \
+	    ($(am__cd) $$subdir && \
+	      $(MAKE) $(AM_MAKEFLAGS) \
+	        top_distdir="$$new_top_distdir" \
+	        distdir="$$new_distdir" \
+		am__remove_distdir=: \
+		am__skip_length_check=: \
+		am__skip_mode_fix=: \
+	        distdir) \
+	      || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-recursive
+all-am: Makefile
+installdirs: installdirs-recursive
+installdirs-am:
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-recursive
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+html: html-recursive
+
+html-am:
+
+info: info-recursive
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-recursive
+
+install-dvi-am:
+
+install-exec-am:
+
+install-html: install-html-recursive
+
+install-html-am:
+
+install-info: install-info-recursive
+
+install-info-am:
+
+install-man:
+
+install-pdf: install-pdf-recursive
+
+install-pdf-am:
+
+install-ps: install-ps-recursive
+
+install-ps-am:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-generic mostlyclean-libtool
+
+pdf: pdf-recursive
+
+pdf-am:
+
+ps: ps-recursive
+
+ps-am:
+
+uninstall-am:
+
+.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) ctags-recursive \
+	install-am install-strip tags-recursive
+
+.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
+	all all-am check check-am clean clean-generic clean-libtool \
+	ctags ctags-recursive distclean distclean-generic \
+	distclean-libtool distclean-tags distdir dvi dvi-am html \
+	html-am info info-am install install-am install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs installdirs-am maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic \
+	mostlyclean-libtool pdf pdf-am ps ps-am tags tags-recursive \
+	uninstall uninstall-am
+
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/Makefile.nix b/Makefile.nix
new file mode 100644
index 00000000..69caaddf
--- /dev/null
+++ b/Makefile.nix
@@ -0,0 +1,106 @@
+#jp3d Makefile
+include ../config.nix
+
+TARGET  = openjp3dvm
+COMPILERFLAGS = -O3 -Wall -ffast-math -std=c99 -fPIC
+
+SRCS = ./libjp3dvm/bio.c ./libjp3dvm/cio.c ./libjp3dvm/dwt.c \
+  ./libjp3dvm/event.c ./libjp3dvm/jp3d.c ./libjp3dvm/jp3d_lib.c \
+  ./libjp3dvm/volume.c ./libjp3dvm/mct.c ./libjp3dvm/mqc.c \
+  ./libjp3dvm/openjpeg.c ./libjp3dvm/pi.c ./libjp3dvm/raw.c \
+  ./libjp3dvm/t1.c ./libjp3dvm/t1_3d.c ./libjp3dvm/t2.c \
+  ./libjp3dvm/tcd.c ./libjp3dvm/tgt.c
+
+INCLS = ./libjp3dvm/t1_3d.h ./libjp3dvm/bio.h ./libjp3dvm/cio.h \
+  ./libjp3dvm/dwt.h ./libjp3dvm/event.h ./libjp3dvm/fix.h \
+  ./libjp3dvm/int.h ./libjp3dvm/jp3d.h ./libjp3dvm/jp3d_lib.h \
+  ./libjp3dvm/volume.h ./libjp3dvm/mct.h ./libjp3dvm/mqc.h \
+  ./libjp3dvm/openjpeg.h ./libjp3dvm/pi.h ./libjp3dvm/raw.h \
+  ./libjp3dvm/t1.h  ./libjp3dvm/t2.h ./libjp3dvm/tcd.h \
+  ./libjp3dvm/tgt.h ./libjp3dvm/opj_includes.h
+
+INCLUDE = -I.. -Ilibjp3dvm
+
+AR = ar
+
+INSTALL_LIBDIR = $(prefix)/lib
+headerdir = openjpeg3d-$(JP3D_MAJOR).$(JP3D_MINOR)
+INSTALL_INCLUDE = $(prefix)/include/$(headerdir)
+
+# Converts cr/lf to just lf
+DOS2UNIX = dos2unix
+
+LIBRARIES = -lstdc++
+
+MODULES = $(SRCS:.c=.o)
+CFLAGS = $(COMPILERFLAGS) $(INCLUDE)
+
+LIBNAME = lib$(TARGET)
+STATICLIB = $(LIBNAME).a
+
+ifeq ($(ENABLE_SHARED),yes)
+SHAREDLIB = $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR).$(JP3D_BUILD)
+endif
+
+default: all
+
+all: Jp3dVM
+	make -C codec -f Makefile.nix all 
+	install -d ../bin
+	install -m 644 $(STATICLIB) ../bin
+ifeq ($(ENABLE_SHARED),yes)
+	install -m 755 $(SHAREDLIB) ../bin
+	(cd ../bin && \
+	ln -sf $(SHAREDLIB) $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR))
+	(cd ../bin && \
+	ln -sf $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) $(LIBNAME).so)
+endif
+
+dos2unix:
+	@$(DOS2UNIX) $(SRCS) $(INCLS)
+
+Jp3dVM: $(STATICLIB) $(SHAREDLIB)
+
+.c.o:
+	$(CC) $(CFLAGS) -c $< -o $@
+
+$(STATICLIB): $(MODULES)
+	$(AR) r $@ $(MODULES)
+
+ifeq ($(ENABLE_SHARED),yes)
+$(SHAREDLIB): $(MODULES)
+	$(CC) -s -shared -Wl,-soname,$(LIBNAME) -o $@ $(MODULES) $(LIBRARIES)
+endif
+
+install: Jp3dVM
+	install -d '$(DESTDIR)$(INSTALL_LIBDIR)'
+	install -m 644 -o root -g root $(STATICLIB) '$(DESTDIR)$(INSTALL_LIBDIR)'
+	(cd $(DESTDIR)$(INSTALL_LIBDIR) && ranlib $(STATICLIB))
+ifeq ($(ENABLE_SHARED),yes)
+	install -m 755 -o root -g root $(SHAREDLIB) '$(DESTDIR)$(INSTALL_LIBDIR)'
+	(cd $(DESTDIR)$(INSTALL_LIBDIR) &&  \
+	ln -sf $(SHAREDLIB) $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) )
+	(cd $(DESTDIR)$(INSTALL_LIBDIR) && \
+	ln -sf $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) $(LIBNAME).so )
+endif
+	ldconfig
+	install -d $(DESTDIR)$(INSTALL_INCLUDE)
+	install -m 644 -o root -g root libjp3dvm/openjpeg.h \
+	$(DESTDIR)$(INSTALL_INCLUDE)
+	(cd $(DESTDIR)$(prefix)/include && \
+	ln -sf $(headerdir)/openjpeg.h openjpeg3d.h)
+	make -C codec -f Makefile.nix install
+
+uninstall:
+	rm -f $(DESTDIR)$(INSTALL_LIBDIR)/$(STATICLIB)
+ifeq ($(ENABLE_SHARED),yes)
+	(cd $(DESTDIR)$(INSTALL_LIBDIR) && \
+	rm $(LIBNAME).so $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) $(SHAREDLIB))
+endif
+	ldconfig
+	rm -f $(DESTDIR)$(prefix)/include/openjpeg3d.h
+	rm -rf $(DESTDIR)$(INSTALL_INCLUDE)
+	make -C codec -f Makefile.nix uninstall
+clean:
+	rm -f core u2dtmp* $(MODULES) $(STATICLIB) $(SHAREDLIB)
+	make -C codec -f Makefile.nix clean
diff --git a/codec/Makefile b/codec/Makefile
deleted file mode 100644
index 94221c7d..00000000
--- a/codec/Makefile
+++ /dev/null
@@ -1,14 +0,0 @@
-# Makefile for the main OpenJPEG codecs: jp3d_to_volume and volume_to_jp3d
-
-CFLAGS = -O3 -lstdc++ # -g -p -pg
-
-all: jp3d_to_volume volume_to_jp3d
-
-jp3d_to_volume: jp3d_to_volume.c ../libjp3dvm.a
-	gcc $(CFLAGS) getopt.c convert.c jp3d_to_volume.c -o jp3d_to_volume -L.. -ljp3dvm -I ../libjp3dvm/ -lm -ltiff
-
-volume_to_jp3d: volume_to_jp3d.c ../libjp3dvm.a
-	gcc $(CFLAGS) getopt.c convert.c volume_to_jp3d.c -o volume_to_jp3d -L.. -ljp3dvm -I ../libjp3dvm/ -lm -ltiff
-
-clean:
-	rm -f jp3d_to_volume volume_to_jp3d
diff --git a/codec/Makefile.am b/codec/Makefile.am
new file mode 100644
index 00000000..9e36582a
--- /dev/null
+++ b/codec/Makefile.am
@@ -0,0 +1,21 @@
+#jp3d/codec/
+
+USERLIBS =
+INCLUDES = -I. -I../libjp3dvm
+CFLAGS = -Wall $(INCLUDES)
+
+bin_PROGRAMS = jp3d_to_volume volume_to_jp3d
+LDADD = $(USERLIBS) ../libjp3dvm/libopenjp3dvm.la
+
+jp3d_to_volume_SOURCES = getopt.c convert.c jp3d_to_volume.c
+
+volume_to_jp3d_SOURCES = getopt.c convert.c volume_to_jp3d.c
+
+REPBIN=$(bin_PROGRAMS)
+
+all-local:
+	$(INSTALL) -d ../../bin
+	$(INSTALL) $(bin_PROGRAMS) ../../bin
+	@(for f in ${REPBIN} ; do \
+	echo "Installing: ${prefix}/bin/$$f" >> ../.report.txt ; \
+	done)
diff --git a/codec/Makefile.in b/codec/Makefile.in
new file mode 100644
index 00000000..d2239034
--- /dev/null
+++ b/codec/Makefile.in
@@ -0,0 +1,565 @@
+# Makefile.in generated by automake 1.11.1 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009  Free Software Foundation,
+# Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#jp3d/codec/
+
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
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+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+target_triplet = @target@
+bin_PROGRAMS = jp3d_to_volume$(EXEEXT) volume_to_jp3d$(EXEEXT)
+subdir = jp3d/codec
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/opj_config.h
+CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+PROGRAMS = $(bin_PROGRAMS)
+am_jp3d_to_volume_OBJECTS = getopt.$(OBJEXT) convert.$(OBJEXT) \
+	jp3d_to_volume.$(OBJEXT)
+jp3d_to_volume_OBJECTS = $(am_jp3d_to_volume_OBJECTS)
+jp3d_to_volume_LDADD = $(LDADD)
+am__DEPENDENCIES_1 =
+jp3d_to_volume_DEPENDENCIES = $(am__DEPENDENCIES_1) \
+	../libjp3dvm/libopenjp3dvm.la
+am_volume_to_jp3d_OBJECTS = getopt.$(OBJEXT) convert.$(OBJEXT) \
+	volume_to_jp3d.$(OBJEXT)
+volume_to_jp3d_OBJECTS = $(am_volume_to_jp3d_OBJECTS)
+volume_to_jp3d_LDADD = $(LDADD)
+volume_to_jp3d_DEPENDENCIES = $(am__DEPENDENCIES_1) \
+	../libjp3dvm/libopenjp3dvm.la
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+am__depfiles_maybe = depfiles
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+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+	--mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+	--mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+	$(LDFLAGS) -o $@
+SOURCES = $(jp3d_to_volume_SOURCES) $(volume_to_jp3d_SOURCES)
+DIST_SOURCES = $(jp3d_to_volume_SOURCES) $(volume_to_jp3d_SOURCES)
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = @ACLOCAL@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
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+AWK = @AWK@
+BUILD_NR = @BUILD_NR@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CFLAGS = -Wall $(INCLUDES)
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@
+CYGPATH_W = @CYGPATH_W@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DLLTOOL = @DLLTOOL@
+DSYMUTIL = @DSYMUTIL@
+DUMPBIN = @DUMPBIN@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
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+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+FGREP = @FGREP@
+GREP = @GREP@
+INSTALL = @INSTALL@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+JP3D_BUILD_NR = @JP3D_BUILD_NR@
+JP3D_MAJOR_NR = @JP3D_MAJOR_NR@
+JP3D_MINOR_NR = @JP3D_MINOR_NR@
+LD = @LD@
+LDFLAGS = @LDFLAGS@
+LDLIBS = @LDLIBS@
+LIBOBJS = @LIBOBJS@
+LIBPNG_CONFIG = @LIBPNG_CONFIG@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LIPO = @LIPO@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+MAJOR_NR = @MAJOR_NR@
+MAKEINFO = @MAKEINFO@
+MINOR_NR = @MINOR_NR@
+MKDIR_P = @MKDIR_P@
+NM = @NM@
+NMEDIT = @NMEDIT@
+OBJDUMP = @OBJDUMP@
+OBJEXT = @OBJEXT@
+OTOOL = @OTOOL@
+OTOOL64 = @OTOOL64@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_URL = @PACKAGE_URL@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+PKGCONFIG = @PKGCONFIG@
+RANLIB = @RANLIB@
+SED = @SED@
+SET_MAKE = @SET_MAKE@
+SHELL = @SHELL@
+STRIP = @STRIP@
+VERSION = @VERSION@
+abs_builddir = @abs_builddir@
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+abs_top_builddir = @abs_top_builddir@
+abs_top_srcdir = @abs_top_srcdir@
+ac_ct_CC = @ac_ct_CC@
+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
+am__include = @am__include@
+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
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+build_alias = @build_alias@
+build_cpu = @build_cpu@
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+build_vendor = @build_vendor@
+builddir = @builddir@
+datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+doxy_dir = @doxy_dir@
+dvidir = @dvidir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+htmldir = @htmldir@
+includedir = @includedir@
+infodir = @infodir@
+install_sh = @install_sh@
+jp3d_dir = @jp3d_dir@
+jpwl_dir = @jpwl_dir@
+lcms1includes = @lcms1includes@
+lcms1libs = @lcms1libs@
+lcms2includes = @lcms2includes@
+lcms2libs = @lcms2libs@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localedir = @localedir@
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+lt_ECHO = @lt_ECHO@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
+pngincludes = @pngincludes@
+pnglibs = @pnglibs@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+psdir = @psdir@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+srcdir = @srcdir@
+sysconfdir = @sysconfdir@
+target = @target@
+target_alias = @target_alias@
+target_cpu = @target_cpu@
+target_os = @target_os@
+target_vendor = @target_vendor@
+tiffincludes = @tiffincludes@
+tifflibs = @tifflibs@
+top_build_prefix = @top_build_prefix@
+top_builddir = @top_builddir@
+top_srcdir = @top_srcdir@
+with_doxygen = @with_doxygen@
+USERLIBS = 
+INCLUDES = -I. -I../libjp3dvm
+LDADD = $(USERLIBS) ../libjp3dvm/libopenjp3dvm.la
+jp3d_to_volume_SOURCES = getopt.c convert.c jp3d_to_volume.c
+volume_to_jp3d_SOURCES = getopt.c convert.c volume_to_jp3d.c
+REPBIN = $(bin_PROGRAMS)
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign jp3d/codec/Makefile'; \
+	$(am__cd) $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign jp3d/codec/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(am__aclocal_m4_deps):
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
+	for p in $$list; do echo "$$p $$p"; done | \
+	sed 's/$(EXEEXT)$$//' | \
+	while read p p1; do if test -f $$p || test -f $$p1; \
+	  then echo "$$p"; echo "$$p"; else :; fi; \
+	done | \
+	sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \
+	    -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
+	sed 'N;N;N;s,\n, ,g' | \
+	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
+	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
+	    if ($$2 == $$4) files[d] = files[d] " " $$1; \
+	    else { print "f", $$3 "/" $$4, $$1; } } \
+	  END { for (d in files) print "f", d, files[d] }' | \
+	while read type dir files; do \
+	    if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
+	    test -z "$$files" || { \
+	    echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
+	    $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
+	    } \
+	; done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
+	files=`for p in $$list; do echo "$$p"; done | \
+	  sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
+	      -e 's/$$/$(EXEEXT)/' `; \
+	test -n "$$list" || exit 0; \
+	echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
+	cd "$(DESTDIR)$(bindir)" && rm -f $$files
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \
+	echo " rm -f" $$list; \
+	rm -f $$list || exit $$?; \
+	test -n "$(EXEEXT)" || exit 0; \
+	list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
+	echo " rm -f" $$list; \
+	rm -f $$list
+jp3d_to_volume$(EXEEXT): $(jp3d_to_volume_OBJECTS) $(jp3d_to_volume_DEPENDENCIES) 
+	@rm -f jp3d_to_volume$(EXEEXT)
+	$(LINK) $(jp3d_to_volume_OBJECTS) $(jp3d_to_volume_LDADD) $(LIBS)
+volume_to_jp3d$(EXEEXT): $(volume_to_jp3d_OBJECTS) $(volume_to_jp3d_DEPENDENCIES) 
+	@rm -f volume_to_jp3d$(EXEEXT)
+	$(LINK) $(volume_to_jp3d_OBJECTS) $(volume_to_jp3d_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT)
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/convert.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/getopt.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/jp3d_to_volume.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/volume_to_jp3d.Po@am__quote@
+
+.c.o:
+@am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(COMPILE) -c $<
+
+.c.obj:
+@am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(COMPILE) -c `$(CYGPATH_W) '$<'`
+
+.c.lo:
+@am__fastdepCC_TRUE@	$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	mkid -fID $$unique
+tags: TAGS
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	set x; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	shift; \
+	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
+	  test -n "$$unique" || unique=$$empty_fix; \
+	  if test $$# -gt 0; then \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	      "$$@" $$unique; \
+	  else \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	      $$unique; \
+	  fi; \
+	fi
+ctags: CTAGS
+CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	test -z "$(CTAGS_ARGS)$$unique" \
+	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+	     $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && $(am__cd) $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) "$$here"
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d "$(distdir)/$$file"; then \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+	    fi; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+	    fi; \
+	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
+	  else \
+	    test -f "$(distdir)/$$file" \
+	    || cp -p $$d/$$file "$(distdir)/$$file" \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+html-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-dvi-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-html: install-html-am
+
+install-html-am:
+
+install-info: install-info-am
+
+install-info-am:
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-pdf-am:
+
+install-ps: install-ps-am
+
+install-ps-am:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+pdf: pdf-am
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+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binPROGRAMS
+
+.MAKE: install-am install-strip
+
+.PHONY: CTAGS GTAGS all all-am all-local check check-am clean \
+	clean-binPROGRAMS clean-generic clean-libtool ctags distclean \
+	distclean-compile distclean-generic distclean-libtool \
+	distclean-tags distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binPROGRAMS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
+	tags uninstall uninstall-am uninstall-binPROGRAMS
+
+
+all-local:
+	$(INSTALL) -d ../../bin
+	$(INSTALL) $(bin_PROGRAMS) ../../bin
+	@(for f in ${REPBIN} ; do \
+	echo "Installing: ${prefix}/bin/$$f" >> ../.report.txt ; \
+	done)
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/codec/Makefile.nix b/codec/Makefile.nix
new file mode 100644
index 00000000..b87a4d34
--- /dev/null
+++ b/codec/Makefile.nix
@@ -0,0 +1,31 @@
+#jp3d/codec/Makefile
+
+include ../../config.nix
+
+INSTALL_BIN = $(prefix)/bin
+CFLAGS = -Wall -I. -I../libjp3dvm -lstdc++ # -g -p -pg
+#USERLIBS = -lm
+
+all: jp3d_to_volume volume_to_jp3d
+	install -d ../../bin
+	install jp3d_to_volume volume_to_jp3d ../../bin
+
+jp3d_to_volume: jp3d_to_volume.c ../libopenjp3dvm.a
+	$(CC) $(CFLAGS) getopt.c convert.c jp3d_to_volume.c \
+	-o jp3d_to_volume ../libopenjp3dvm.a $(USERLIBS)
+
+volume_to_jp3d: volume_to_jp3d.c ../libopenjp3dvm.a
+	$(CC) $(CFLAGS) getopt.c convert.c volume_to_jp3d.c \
+	-o volume_to_jp3d ../libopenjp3dvm.a $(USERLIBS)
+
+clean:
+	rm -f jp3d_to_volume volume_to_jp3d
+
+install: all
+	install -d $(DESTDIR)$(INSTALL_BIN)
+	install -m 755 -o root -g root jp3d_to_volume $(DESTDIR)$(INSTALL_BIN)
+	install -m 755 -o root -g root volume_to_jp3d $(DESTDIR)$(INSTALL_BIN)
+
+uninstall:
+	rm -f $(DESTDIR)$(INSTALL_BIN)/jp3d_to_volume
+	rm -f $(DESTDIR)$(INSTALL_BIN)/volume_to_jp3d
diff --git a/codec/convert.c b/codec/convert.c
index 07ecd929..b9aa656f 100755
--- a/codec/convert.c
+++ b/codec/convert.c
@@ -31,9 +31,9 @@
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
-#include "openjpeg.h"
+#include "../libjp3dvm/openjpeg.h"
 #ifdef WIN32
-#include "dirent.h"
+#include "windirent.h"
 #else
 #include <dirent.h>
 #endif /* WIN32 */
diff --git a/codec/jp3d_to_volume.c b/codec/jp3d_to_volume.c
index b5c75756..ee4425f2 100755
--- a/codec/jp3d_to_volume.c
+++ b/codec/jp3d_to_volume.c
@@ -33,7 +33,7 @@
 #include <stdlib.h>

 #include <math.h>

 

-#include "openjpeg.h"

+#include "../libjp3dvm/openjpeg.h"

 #include "getopt.h"

 #include "convert.h"

 

diff --git a/codec/volume_to_jp3d.c b/codec/volume_to_jp3d.c
index da4ca25c..238c47f5 100755
--- a/codec/volume_to_jp3d.c
+++ b/codec/volume_to_jp3d.c
@@ -32,7 +32,7 @@
 #include <string.h>

 #include <stdlib.h>

 

-#include "openjpeg.h"

+#include "../libjp3dvm/openjpeg.h"

 #include "getopt.h"

 #include "convert.h"

 

diff --git a/codec/dirent.h b/codec/windirent.h
index a67e5874..a67e5874 100755..100644
--- a/codec/dirent.h
+++ b/codec/windirent.h
diff --git a/libjp3dvm/CMakeLists.txt b/libjp3dvm/CMakeLists.txt
index 17a094af..e3fa1787 100644
--- a/libjp3dvm/CMakeLists.txt
+++ b/libjp3dvm/CMakeLists.txt
@@ -21,4 +21,4 @@ ADD_LIBRARY(${OPJ_PREFIX}openjp3dvm ${JP3DVM_SRCS})
 INSTALL_TARGETS(/lib/ ${OPJ_PREFIX}openjp3dvm)
 
 # Install includes files
-INSTALL_FILES(/include .h)
+INSTALL_FILES(/include/${subdir} openjpeg.h)
diff --git a/libjp3dvm/Makefile.am b/libjp3dvm/Makefile.am
new file mode 100644
index 00000000..9f8fce36
--- /dev/null
+++ b/libjp3dvm/Makefile.am
@@ -0,0 +1,63 @@
+#libjp3dvm
+#
+MAJOR = @JP3D_MAJOR_NR@
+MINOR = @JP3D_MINOR_NR@
+BUILD = @JP3D_BUILD_NR@
+CURRENT=`expr $(MAJOR) + $(MINOR)`
+
+lib_LTLIBRARIES = libopenjp3dvm.la
+
+libopenjp3dvm_la_LDFLAGS = -no-undefined \
+  -version-info $(CURRENT):$(BUILD):$(MINOR)
+
+SRCS = bio.c cio.c dwt.c event.c jp3d.c jp3d_lib.c volume.c mct.c mqc.c \
+  openjpeg.c pi.c raw.c t1.c t1_3d.c t2.c tcd.c tgt.c
+
+INCLS = t1_3d.h bio.h cio.h  dwt.h event.h fix.h int.h jp3d.h jp3d_lib.h \
+  volume.h mct.h mqc.h pi.h raw.h t1.h  t2.h tcd.h tgt.h opj_includes.h
+
+libopenjp3dvm_la_SOURCES = $(SRCS) $(INCLS)
+
+includedir = ${prefix}/include/openjpeg3d-$(MAJOR).$(MINOR)
+include_HEADERS = openjpeg.h
+
+# Converts cr/lf to just lf
+DOS2UNIX = dos2unix
+
+dos2unix:
+	@$(DOS2UNIX) $(SRCS) $(INCLS)
+
+
+INCLUDES = -I../.. -I.. -I.
+COMPILERFLAGS = -Wall -O3 -ffast-math -std=c99
+
+CFLAGS = $(COMPILERFLAGS) $(INCLUDES) 
+#CFLAGS += -DJP3D_VERSION="\"$(MAJOR).$(MINOR).$(BUILD)\""
+
+headerdir = openjpeg3d-$(MAJOR).$(MINOR)
+
+all-local:
+	@$(INSTALL) -d ../../bin
+	@cp -d .libs/libopenjp3dvm.* ../../bin
+	@rm -f ../../bin/libopenjp3dvm.la*
+	@rm -rf .report_lib
+	@$(INSTALL) -d .report_lib
+	@cp -d .libs/libopenjp3dvm.* .report_lib
+	@rm -f .report_lib/libopenjp3dvm.lai
+	@echo "" > ../.report.txt
+	@echo "Installing: ${prefix}/include/${headerdir}/" >> ../.report.txt
+	@echo "Installing: ${prefix}/include/${headerdir}/openjpeg.h" >> ../.report.txt
+	@(cd .report_lib; \
+	l=`ls --file-type`; \
+	for f in $$l ; do \
+	echo "Installing: ${prefix}/lib/$$f" >> ../../.report.txt ; \
+	done)
+	@rm -rf .report_lib
+
+install-data-hook:
+	(cd $(DESTDIR)${prefix}/include && rm -f openjpeg3d.h)
+	(cd $(DESTDIR)${prefix}/include && \
+	$(LN_S) ${headerdir}/openjpeg.h openjpeg3d.h)
+
+uninstall-hook:
+	(cd $(DESTDIR)${prefix}/include && rm -rf openjpeg3d.h ${headerdir})
diff --git a/libjp3dvm/Makefile.in b/libjp3dvm/Makefile.in
new file mode 100644
index 00000000..689fcfe2
--- /dev/null
+++ b/libjp3dvm/Makefile.in
@@ -0,0 +1,647 @@
+# Makefile.in generated by automake 1.11.1 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009  Free Software Foundation,
+# Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+target_triplet = @target@
+subdir = jp3d/libjp3dvm
+DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \
+	$(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/opj_config.h
+CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
+am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
+am__vpath_adj = case $$p in \
+    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
+    *) f=$$p;; \
+  esac;
+am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
+am__install_max = 40
+am__nobase_strip_setup = \
+  srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
+am__nobase_strip = \
+  for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||"
+am__nobase_list = $(am__nobase_strip_setup); \
+  for p in $$list; do echo "$$p $$p"; done | \
+  sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \
+  $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \
+    if (++n[$$2] == $(am__install_max)) \
+      { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \
+    END { for (dir in files) print dir, files[dir] }'
+am__base_list = \
+  sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \
+  sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
+am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(includedir)"
+LTLIBRARIES = $(lib_LTLIBRARIES)
+libopenjp3dvm_la_LIBADD =
+am__objects_1 = bio.lo cio.lo dwt.lo event.lo jp3d.lo jp3d_lib.lo \
+	volume.lo mct.lo mqc.lo openjpeg.lo pi.lo raw.lo t1.lo \
+	t1_3d.lo t2.lo tcd.lo tgt.lo
+am__objects_2 =
+am_libopenjp3dvm_la_OBJECTS = $(am__objects_1) $(am__objects_2)
+libopenjp3dvm_la_OBJECTS = $(am_libopenjp3dvm_la_OBJECTS)
+libopenjp3dvm_la_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) \
+	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(libopenjp3dvm_la_LDFLAGS) $(LDFLAGS) -o $@
+DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
+depcomp = $(SHELL) $(top_srcdir)/depcomp
+am__depfiles_maybe = depfiles
+am__mv = mv -f
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+	--mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+	--mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+	$(LDFLAGS) -o $@
+SOURCES = $(libopenjp3dvm_la_SOURCES)
+DIST_SOURCES = $(libopenjp3dvm_la_SOURCES)
+HEADERS = $(include_HEADERS)
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = @ACLOCAL@
+AMTAR = @AMTAR@
+AR = @AR@
+AS = @AS@
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
+AWK = @AWK@
+BUILD_NR = @BUILD_NR@
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+CPP = @CPP@
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+DEFS = @DEFS@
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+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+JP3D_BUILD_NR = @JP3D_BUILD_NR@
+JP3D_MAJOR_NR = @JP3D_MAJOR_NR@
+JP3D_MINOR_NR = @JP3D_MINOR_NR@
+LD = @LD@
+LDFLAGS = @LDFLAGS@
+LDLIBS = @LDLIBS@
+LIBOBJS = @LIBOBJS@
+LIBPNG_CONFIG = @LIBPNG_CONFIG@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LIPO = @LIPO@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+MAJOR_NR = @MAJOR_NR@
+MAKEINFO = @MAKEINFO@
+MINOR_NR = @MINOR_NR@
+MKDIR_P = @MKDIR_P@
+NM = @NM@
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+OBJDUMP = @OBJDUMP@
+OBJEXT = @OBJEXT@
+OTOOL = @OTOOL@
+OTOOL64 = @OTOOL64@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_URL = @PACKAGE_URL@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+PKGCONFIG = @PKGCONFIG@
+RANLIB = @RANLIB@
+SED = @SED@
+SET_MAKE = @SET_MAKE@
+SHELL = @SHELL@
+STRIP = @STRIP@
+VERSION = @VERSION@
+abs_builddir = @abs_builddir@
+abs_srcdir = @abs_srcdir@
+abs_top_builddir = @abs_top_builddir@
+abs_top_srcdir = @abs_top_srcdir@
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+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
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+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
+am__tar = @am__tar@
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+build = @build@
+build_alias = @build_alias@
+build_cpu = @build_cpu@
+build_os = @build_os@
+build_vendor = @build_vendor@
+builddir = @builddir@
+datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+doxy_dir = @doxy_dir@
+dvidir = @dvidir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+htmldir = @htmldir@
+includedir = ${prefix}/include/openjpeg3d-$(MAJOR).$(MINOR)
+infodir = @infodir@
+install_sh = @install_sh@
+jp3d_dir = @jp3d_dir@
+jpwl_dir = @jpwl_dir@
+lcms1includes = @lcms1includes@
+lcms1libs = @lcms1libs@
+lcms2includes = @lcms2includes@
+lcms2libs = @lcms2libs@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localedir = @localedir@
+localstatedir = @localstatedir@
+lt_ECHO = @lt_ECHO@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
+pngincludes = @pngincludes@
+pnglibs = @pnglibs@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+psdir = @psdir@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+srcdir = @srcdir@
+sysconfdir = @sysconfdir@
+target = @target@
+target_alias = @target_alias@
+target_cpu = @target_cpu@
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+target_vendor = @target_vendor@
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+top_build_prefix = @top_build_prefix@
+top_builddir = @top_builddir@
+top_srcdir = @top_srcdir@
+with_doxygen = @with_doxygen@
+
+#libjp3dvm
+#
+MAJOR = @JP3D_MAJOR_NR@
+MINOR = @JP3D_MINOR_NR@
+BUILD = @JP3D_BUILD_NR@
+CURRENT = `expr $(MAJOR) + $(MINOR)`
+lib_LTLIBRARIES = libopenjp3dvm.la
+libopenjp3dvm_la_LDFLAGS = -no-undefined \
+  -version-info $(CURRENT):$(BUILD):$(MINOR)
+
+SRCS = bio.c cio.c dwt.c event.c jp3d.c jp3d_lib.c volume.c mct.c mqc.c \
+  openjpeg.c pi.c raw.c t1.c t1_3d.c t2.c tcd.c tgt.c
+
+INCLS = t1_3d.h bio.h cio.h  dwt.h event.h fix.h int.h jp3d.h jp3d_lib.h \
+  volume.h mct.h mqc.h pi.h raw.h t1.h  t2.h tcd.h tgt.h opj_includes.h
+
+libopenjp3dvm_la_SOURCES = $(SRCS) $(INCLS)
+include_HEADERS = openjpeg.h
+
+# Converts cr/lf to just lf
+DOS2UNIX = dos2unix
+INCLUDES = -I../.. -I.. -I.
+COMPILERFLAGS = -Wall -O3 -ffast-math -std=c99
+#CFLAGS += -DJP3D_VERSION="\"$(MAJOR).$(MINOR).$(BUILD)\""
+headerdir = openjpeg3d-$(MAJOR).$(MINOR)
+all: all-am
+
+.SUFFIXES:
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+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign jp3d/libjp3dvm/Makefile'; \
+	$(am__cd) $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign jp3d/libjp3dvm/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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+	test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)"
+	@list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \
+	list2=; for p in $$list; do \
+	  if test -f $$p; then \
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+	done; \
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+	  $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \
+	}
+
+uninstall-libLTLIBRARIES:
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+	@list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \
+	for p in $$list; do \
+	  $(am__strip_dir) \
+	  echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \
+	  $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \
+	done
+
+clean-libLTLIBRARIES:
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+	@list='$(lib_LTLIBRARIES)'; for p in $$list; do \
+	  dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
+	  test "$$dir" != "$$p" || dir=.; \
+	  echo "rm -f \"$${dir}/so_locations\""; \
+	  rm -f "$${dir}/so_locations"; \
+	done
+libopenjp3dvm.la: $(libopenjp3dvm_la_OBJECTS) $(libopenjp3dvm_la_DEPENDENCIES) 
+	$(libopenjp3dvm_la_LINK) -rpath $(libdir) $(libopenjp3dvm_la_OBJECTS) $(libopenjp3dvm_la_LIBADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT)
+
+distclean-compile:
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+
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+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
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+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
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+@am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+install-includeHEADERS: $(include_HEADERS)
+	@$(NORMAL_INSTALL)
+	test -z "$(includedir)" || $(MKDIR_P) "$(DESTDIR)$(includedir)"
+	@list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \
+	for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  echo "$$d$$p"; \
+	done | $(am__base_list) | \
+	while read files; do \
+	  echo " $(INSTALL_HEADER) $$files '$(DESTDIR)$(includedir)'"; \
+	  $(INSTALL_HEADER) $$files "$(DESTDIR)$(includedir)" || exit $$?; \
+	done
+
+uninstall-includeHEADERS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \
+	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
+	test -n "$$files" || exit 0; \
+	echo " ( cd '$(DESTDIR)$(includedir)' && rm -f" $$files ")"; \
+	cd "$(DESTDIR)$(includedir)" && rm -f $$files
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	mkid -fID $$unique
+tags: TAGS
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	set x; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	shift; \
+	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
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+	  if test $$# -gt 0; then \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
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+	  else \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	      $$unique; \
+	  fi; \
+	fi
+ctags: CTAGS
+CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	test -z "$(CTAGS_ARGS)$$unique" \
+	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+	     $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && $(am__cd) $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) "$$here"
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d "$(distdir)/$$file"; then \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+	    fi; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+	    fi; \
+	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
+	  else \
+	    test -f "$(distdir)/$$file" \
+	    || cp -p $$d/$$file "$(distdir)/$$file" \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(LTLIBRARIES) $(HEADERS) all-local
+installdirs:
+	for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(includedir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic clean-libLTLIBRARIES clean-libtool \
+	mostlyclean-am
+
+distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+html-am:
+
+info: info-am
+
+info-am:
+
+install-data-am: install-includeHEADERS
+	@$(NORMAL_INSTALL)
+	$(MAKE) $(AM_MAKEFLAGS) install-data-hook
+install-dvi: install-dvi-am
+
+install-dvi-am:
+
+install-exec-am: install-libLTLIBRARIES
+
+install-html: install-html-am
+
+install-html-am:
+
+install-info: install-info-am
+
+install-info-am:
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-pdf-am:
+
+install-ps: install-ps-am
+
+install-ps-am:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-includeHEADERS uninstall-libLTLIBRARIES
+	@$(NORMAL_INSTALL)
+	$(MAKE) $(AM_MAKEFLAGS) uninstall-hook
+.MAKE: install-am install-data-am install-strip uninstall-am
+
+.PHONY: CTAGS GTAGS all all-am all-local check check-am clean \
+	clean-generic clean-libLTLIBRARIES clean-libtool ctags \
+	distclean distclean-compile distclean-generic \
+	distclean-libtool distclean-tags distdir dvi dvi-am html \
+	html-am info info-am install install-am install-data \
+	install-data-am install-data-hook install-dvi install-dvi-am \
+	install-exec install-exec-am install-html install-html-am \
+	install-includeHEADERS install-info install-info-am \
+	install-libLTLIBRARIES install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
+	tags uninstall uninstall-am uninstall-hook \
+	uninstall-includeHEADERS uninstall-libLTLIBRARIES
+
+
+dos2unix:
+	@$(DOS2UNIX) $(SRCS) $(INCLS)
+
+all-local:
+	@$(INSTALL) -d ../../bin
+	@cp -d .libs/libopenjp3dvm.* ../../bin
+	@rm -f ../../bin/libopenjp3dvm.la*
+	@rm -rf .report_lib
+	@$(INSTALL) -d .report_lib
+	@cp -d .libs/libopenjp3dvm.* .report_lib
+	@rm -f .report_lib/libopenjp3dvm.lai
+	@echo "" > ../.report.txt
+	@echo "Installing: ${prefix}/include/${headerdir}/" >> ../.report.txt
+	@echo "Installing: ${prefix}/include/${headerdir}/openjpeg.h" >> ../.report.txt
+	@(cd .report_lib; \
+	l=`ls --file-type`; \
+	for f in $$l ; do \
+	echo "Installing: ${prefix}/lib/$$f" >> ../../.report.txt ; \
+	done)
+	@rm -rf .report_lib
+
+install-data-hook:
+	(cd $(DESTDIR)${prefix}/include && rm -f openjpeg3d.h)
+	(cd $(DESTDIR)${prefix}/include && \
+	$(LN_S) ${headerdir}/openjpeg.h openjpeg3d.h)
+
+uninstall-hook:
+	(cd $(DESTDIR)${prefix}/include && rm -rf openjpeg3d.h ${headerdir})
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/libjp3dvm/dwt.c b/libjp3dvm/dwt.c
index 39ee15c2..4ac23bb3 100755
--- a/libjp3dvm/dwt.c
+++ b/libjp3dvm/dwt.c
@@ -683,7 +683,7 @@ void dwt_encode(opj_tcd_tilecomp_t * tilec, int dwtid[3]) {
 
 	a = tilec->data;
 
-	for (x = 0, y = 0, z = 0; x < levelx, y < levely; x++, y++, z++) {

+	for (x = 0, y = 0, z = 0; (x < levelx) && (y < levely); x++, y++, z++) {

 		int rw;			/* width of the resolution level computed                                                           */

 		int rh;			/* heigth of the resolution level computed                                                          */

 		int rd;			/* depth of the resolution level computed                                                          */

@@ -812,7 +812,7 @@ void dwt_decode(opj_tcd_tilecomp_t * tilec, int stops[3], int dwtid[3]) {
 	diff = tilec->numresolution[0] - tilec->numresolution[2];
 		
 /* General lifting framework -- DCCS-LIWT */
-	for (x = level - 1, y = level - 1, z = level - 1; x >= stops[0], y >= stops[1]; x--, y--, z--) {
+	for (x = level - 1, y = level - 1, z = level - 1; (x >= stops[0]) && (y >= stops[1]); x--, y--, z--) {
 		int rw;			/* width of the resolution level computed                                                           */

 		int rh;			/* heigth of the resolution level computed                                                          */

 		int rd;			/* depth of the resolution level computed                                                          */

diff --git a/libjp3dvm/openjpeg.c b/libjp3dvm/openjpeg.c
index 2a6fe7c6..eb4c39bf 100755
--- a/libjp3dvm/openjpeg.c
+++ b/libjp3dvm/openjpeg.c
@@ -30,7 +30,7 @@
 #endif /* WIN32 */

 

 #include "opj_includes.h"

-

+#define JP3D_VERSION "1.3.0"

 /* ---------------------------------------------------------------------- */

 #ifdef WIN32

 #ifndef OPJ_STATIC

@@ -54,7 +54,7 @@ DllMain(HANDLE hModule, DWORD ul_reason_for_call, LPVOID lpReserved) {
 /* ---------------------------------------------------------------------- */

 

 const char* OPJ_CALLCONV opj_version() {

-    return OPENJPEG_VERSION;

+    return JP3D_VERSION;

 }

 opj_dinfo_t* OPJ_CALLCONV opj_create_decompress(OPJ_CODEC_FORMAT format) {

 	opj_dinfo_t *dinfo = (opj_dinfo_t*)opj_malloc(sizeof(opj_dinfo_t));

diff --git a/libjp3dvm/openjpeg.h b/libjp3dvm/openjpeg.h
index 36c09aff..ee878ebc 100755
--- a/libjp3dvm/openjpeg.h
+++ b/libjp3dvm/openjpeg.h
@@ -31,8 +31,6 @@
 #ifndef OPENJPEG_H

 #define OPENJPEG_H

 

-#define OPENJPEG_VERSION "1.0.0"

-

 /* 

 ==========================================================

    Compiler directives

diff --git a/tcltk/README b/tcltk/README
new file mode 100644
index 00000000..f4e2e359
--- /dev/null
+++ b/tcltk/README
@@ -0,0 +1,13 @@
+HOWTO USE THE TCL/TK APP IN 'jp3d/tcltk'
+----------------------------------------
+1. Download the 'BWidget-1.9.2'
+    http://www.sourceforge.net/projects/tcllib/
+
+2. Install it e.g. in '/usr/local/BWidget-1.9.2/'
+3. Add the lappend command in line 4
+  to jp3d/tcltk/LPI_JP3D_VM.tcl:
+
+#!/bin/sh
+# The next line is executed by /bin/sh, but not tcl \
+exec wish "$0" ${1+"$@"}
+lappend auto_path /usr/local/BWidget-1.9.2